GeCKO - Durum Wheat domestication use case - Dataset

Dataset

GeCKO - Durum Wheat domestication use case

DOI

GeCKO provides four workflows (DataCleaning, ReadsMapping, VariantsCalling, and VcfFiltering), which allow one to easily chain the different analyses needed to transform raw reads into filtered genotypes (VCF file). In the GeCKO paper, we illustrate the features of GeCKO through a step-by-step analysis that traces the impact of domestication on allele diversity in durum wheat. This dataset provides input files needed to reproduce this analysis.

Identifier
DOI	https://doi.org/10.57745/78MBZY
Metadata Access	https://entrepot.recherche.data.gouv.fr/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.57745/78MBZY

Provenance
Creator	Ardisson, Morgane
Publisher	Recherche Data Gouv
Contributor	Ardisson, Morgane; Entrepôt-Catalogue Recherche Data Gouv
Publication Year	2023
Rights	etalab 2.0; info:eu-repo/semantics/openAccess; https://spdx.org/licenses/etalab-2.0.html
OpenAccess	true
Contact	Ardisson, Morgane (INRAE)

Representation
Resource Type	Dataset
Format	application/x-gzip; text/plain; application/vnd.realvnc.bed
Size	22625594; 9052; 8468; 1364; 1276; 17293149784; 19061996853; 17458963498; 19411987843; 1309; 8638; 3281; 134908647; 580520
Version	1.0
Discipline	Agriculture, Forestry, Horticulture; Agricultural Sciences; Agriculture, Forestry, Horticulture, Aquaculture; Agriculture, Forestry, Horticulture, Aquaculture and Veterinary Medicine; Life Sciences