Collagen breaks at weak sacrificial bonds taming its mechanoradicals [Data]

DOI

This dataset contains input files for MD simulations, derived breakage counts from these simulations that are used to generate the figures in the publication, and the experimental, uncropped SDS-PAGE gels of the presented results in the related publication.

Abstract of related publication: Collagen is a force-bearing, hierarchical structural protein important to all connective tissue. In tendon collagen, high load even below macroscopic failure level creates mechanoradicals by homolytic bond scission, similar to polymers. The location and type of initial rupture sites critically decide on both the mechanical and chemical impact of these micro-ruptures on the tissue, but are yet to be explored. We here use scale-bridging simulations supported by gel electrophoresis and mass spectrometry to determine breakage points in collagen. We find collagen crosslinks, as opposed to the backbone, to harbor the weakest bonds, with one particular bond in trivalent crosslinks as the most dominant rupture site. We identify this bond as sacrificial, rupturing prior to other bonds while maintaining the material’s integrity. Also, collagen’s weak bonds funnel ruptures such that the potentially harmful mechanoradicals are readily stabilized. Our results suggest this unique failure mode of collagen to be tailored towards combatting an early onset of macroscopic failure and material ageing.

Identifier
DOI https://doi.org/10.11588/data/HJ6SVM
Related Identifier https://doi.org/10.1038/s41467-023-37726-z
Related Identifier https://doi.org/10.1101/2022.10.17.512491
Metadata Access https://heidata.uni-heidelberg.de/oai?verb=GetRecord&metadataPrefix=oai_datacite&identifier=doi:10.11588/data/HJ6SVM
Provenance
Creator Rennekamp, Benedikt; Gräter, Frauke ORCID logo
Publisher heiDATA
Contributor Gräter, Frauke
Publication Year 2023
Rights CC BY 4.0; info:eu-repo/semantics/openAccess; http://creativecommons.org/licenses/by/4.0
OpenAccess true
Contact Gräter, Frauke (Heidelberg Institute for Theoretical Studies, Heidelberg, Germany)
Representation
Resource Type Dataset
Format text/tab-separated-values; text/csv; image/jpeg; text/plain; application/zip
Size 739; 946; 231986955; 250120536; 222154099; 222154512; 1262997; 2819096; 3391632; 3605602; 2159; 4358638385; 3903808569; 3277; 1338324; 6225; 6232; 6231; 6229; 7389; 6823; 6703; 6859
Version 1.1
Discipline Chemistry; Life Sciences; Medicine; Natural Sciences; Physics