-
Cold water coral aquarium microbiome
A study on the effect of diet on the bacterial communities associated to two cold water coral species, Lophelia pertusa and Madrepora oculata, maintained in captivity -
Role of Tissue-specific Microbiota in Initial Establishment Success of Pacifi...
We transplanted oysters from two invasive, genetically distinct invasive populations of the Wadden sea (Texel, Netherlands and Sylt, Germany, and monitored the short term... -
Viral communities associated with algal/coral interactions
Coral competition with benthic algae has been shown to alter the bacterial communities associated with the coral. Certain groups of algae lead to an increase in potential... -
Successional Dynamics and Seascape-Level Patterns of Microbial Communities on...
Canopy-forming kelps create underwater forests that are among the most productive marine ecosystems. On the Pacific coast of North America, two canopy-forming kelps with... -
2018 Australia fish microbiome study
Atl salmon study ABSTRACT Successful rearing of fish in hatcheries is critical for conservation, recreational fishing, and commercial fishing through wild stock enhancements,... -
Tissue-scale microbiota of the Mediterranean mussel (Mytilus galloprovinciali...
In this study, we characterize the structural variation of the microbiota of Mytilus galloprovincialis at the tissue scale, also exploring the connection with the microbial... -
Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribe...
combined samples sequenced with primers modified for forward barcoding on the 515f site, extended to include V5 and improved ITS -
DNA extraction comparison testing 2019-2020
Our DNA extraction protocol is years old, and we want to compare new extraction methods to address outstanding issues. For more details, check out the motivation and... -
A simple microbiome in the European common cuttlefish, Sepia officinalis
The European common cuttlefish, Sepia officinalis, is used extensively in biological and biomedical research yet its microbiome remains poorly characterized. We analyzed the... -
3D multi-omic profiling of an assemblage of Hawaiian corals
Samples were taken from species Porities lobata, Montipora capitata, Montipora flabellata and subjected to 16S sequencing for bacterial profiling and LC-MS/MS for metabolomic... -
Zebrafish intestinal microbiota 16S rRNA gene sequencing - Developmental time...
The goal of this study was to catalogue the microbial constituents and diversity of the zebrafish intestinal microbiota throughout the development of the host. A sibship of... -
Patterns in microbiome composition differ with ocean acidification in three a...
Microbiomes are generally referred as plastic entities, able to adapt their composition and functionality in response to environmental change, with a possible impact on corals... -
Bacterial 16S rRNA V4 amplicons representing intestinal microbiota of channel...
Catfish gut metagenome -
Pacific oyster (Crassostrea gigas) hemolymph microbiota in response to temper...
In order to experimentally examine temperature and condition dependent interactions between hosts, microbiota and external pathogens, Pacific oysters acclimated to 8°C or 22°C... -
Metagenomic analyses of the RNA viral communities in sponge samples
We performed metagenomic analyses for RNA viral community by targeting long dsRNA in cellular organisms, a hallmark of infection or replication of both dsRNA and ssRNA viruses... -
Global patterns of 16S rRNA diversity at a depth of millions of sequences per...
The ongoing revolution in high-throughput sequencing continues to democratize the ability of small groups of investigators to map the microbial component of the biosphere. In... -
Earth Microbiome Project Multi-omics (EMP500)
The Earth Microbiome Project Multi-omics component (EMP500) involves amplicon and shotgun metagenomic sequencing and metabolomic profiling of over five hundred microbial... -
Whole genome resequencing of Magnaporthe oryzae and M. grisea
To understand the genetic mechanisms that drive host specialization of M. oryzae, we carried out whole genome resequencing of four M. oryzae isolates from rice (Oryza sativa),... -
Microbial effects of livestock manure fertilization on freshwater aquaculture...
The majority of seafood is produced from farming, with most finfish coming from freshwater ponds. Across continents, aquaculture is growing fastest in Africa at 11.7 % annual... -
Fish microbiota 101: host traits, ecology, and environmental factors influenc...
Fish are the most diverse and widely distributed vertebrates, yet little is known about the microbial ecology of fishes nor the biological and environmental factors that...