20 datasets found

Definition of functional regulatory regions in the vast non-coding fractions of mammalian genomes remains a daunting challenge that underscores our limited understanding of...

Sequencing data used in the manuscript including (1) The sequencing data of 16S, WMS and 2bRAD-M for MOCK (MOCK CAS and ATCC MOCK MSA 1002) and FFPE (only 2bRAD-M sequencing...

This study aims to characterize the human skin facial microbiome at high resolution, covering the entirety of one side of the human face. High resolution spatial profiling has...

Effects of two types of milk on gut microbiome in a weanling rat model

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

Considered as one of the most significant emerging foodborne zoonosis, we have investigated molecular mechanisms of host-parasite relationship in anisakiasis. We performed...

The connection between evolution of regulatory elements and downstream gene expression is incompletely understood in mammals. We carried out a large-scale comparison of matched...

Aldosteroid effects on Neuro-retina in Rat Model. Three treated neuro-retina versus three controls.

In this study, we compare the uterine gene expression changes between non-gestating and gestating states in eight vertebrate species. We test whether there has been convergent...

Microbial community in mangroves sediments

This study determines that genome skimming, shallow depth of sequencing, is capable of accurately quantifying global DNA methylation level across a range of vertebrates.

RNA vesicles content of fungi.

Study somatic mutation in animal tissues, including mutation burden accumulation through lifespan and mutational signatures.

Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references.

We investigated the global phylogeography of the brown rat (Rattus norvegicus) to understand routes of range expansion and population structure.

Mitochondrial heteroplasmy, the presence of more than one mtDNA variant in a cell or individual is not as uncommon as previously thought. It is mostly due to the high mutation...

Toxoplasma gondii is a eukaryotic parasite that form latent cyst in the brain of immunocompetent individuals. The latent parasites infection of the immune privileged central...

The nematode family Strongyloididae is of particular interest because it contains important parasites of medical and veterinary relevance. In addition, species of this family...

We have done RNAseq analyses in yeast and in rat and mouse striatal neurons. The experiments in yeast examine globally the physiological effects of spt4 deletion on the...

Transcriptomic and lipidomic profiling of subcutaneous and visceral adipose tissues in 15 vertebrates