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Cephalopod Transcriptomes
Transcriptomic data from 4 species of cephalopod -
Octopus bimaculoides
biomaterial provider: Eric Edsinger<br><hr> SPAdes preassembly<br> Decontaminated FSCR<br> Decontaminated gx<br> Zanfona<br> Accession:... -
Octopus bimaculoides stellate ganglia under different temperatures
This project aimed to quantify the amount of RNA editing in the stellate ganglia of Octopus bimaculoides exposed to two temperature treatments. Six individuals were placed at 13... -
Animal transcriptomes to advance sonogenetic tools: Octopus bimaculoides
PacBio SMRT Sequel II RNAseq transcriptome of arm tissue from a wild-caught adult Octopus bimaculoides. -
Cephalopod Neurogenomics
Transcriptome profiling of Octopus nervous systems and associated structures provides insights into the molecular organization of neuronal complexity and behavioral flexibility.... -
Evolution of CpH methylation in vertebrate brains
The brain requires complex mechanisms of genome regulation to encode and store behavioural information. In mammals, DNA methylation deposited at non-CG dinucleotides... -
Octopus bimaculoides Transcriptome or Gene expression
Transcriptome sequencing of Octopus bimaculoides -
DNA methylation landscape of 30 day old Octopus bimaculoides hatchlings (whol...
In order to determine the distribution of 5-methyl cytosine throughout the genome of a juvenile Octopus bimaculoides, we carried out reduced representation bisulfite sequencing... -
Searching for light-interacting genes in transcriptomes from non-model organisms
Eyes are an excellent system for establishing causative links between genotype and phenotype because their genetic components tend to be well-characterized and deeply conserved.... -
Octopus bimaculoides visual system single cell sequencing
Using single-cell RNA sequencing, we identified cell types of the octopus visual system. -
RNA sequencing of Octopus bimaculoides bulk tissues
We performed paired end Illumina Hiseq on bulk tissues of Octopus bimaculoides sensory tissues, Libaries were sequenced on two different Lanes Overall design: Tissues from... -
Octopus bimaculoides isolate:UCB-OBI-ISO-001 Genome sequencing and assembly
We sequenced the genome and multiple transcriptomes of the California two-spot octopus, Octopus bimaculoides, to investigate the molecular bases of cephalopod brain and body... -
WGS from sub-esophageal mass (SUB) and gills of two different Octopus bimacul...
In this study, nervous (SUB) and non-nervous (gill) tissues were sequenced through whole genome sequencing (WGS) to define if and at what extent somatic retrotransposition occurs. -
Transcriptomic evolution across bilaterian tissues
We investigate tissue transcriptomic evolution across bilaterian animals by analyzing RNA-seq data from eight different tissues across twenty species. Overall design:... -
Genome-wide expression profiling of Octopus Arm and Hatchlings
This study was carried out to investigate the gene expression profile from arm and hatchlings transcriptome across multiple individual Octopus bimaculoides . Overall design: 3...