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Candida auris
WGS of Candida auris isolated in Canada -
Dual RNA-Seq of host-pathogen interaction between human and major Candida pat...
We studied the host- pathogen interactions between human epithelial cell line A451 with 4 main Candida pathogens (C. albicans, C. glabrata, C. parapsilosis and C. tropicalis)... -
All fungus besides Candida auris Raw sequence reads
Fungus sequenced at Nevada State Public Health Lab that are not Candida auris -
Whole genome sequencing of clinical oral yeast isolates
Oral yeast Whole genome sequencing -
Y1000+ Saccharomycotina yeasts genome sequencing and assembly
Genomes from the Y1000+ project aiming at sequencing the genomes of all the known Saccharomycotina yeasts -
One Day in Denmark 2018 point prevalence survey on fungi
Candida albicans and Candida glabrata are fungal opportunistic pathogens with increasing incidence in worldwide, and higher than expected prevalence in Denmark. We whole-genome... -
Exploring the genomic diversity of species of the Ascomyceta phylum from the ...
The genome sequence of yeast strains from CIRM-Levures collection has been obtained using short read technologies. This data participates in the exploration of the genomic... -
NSPHL HAI WGS raw reads
Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab -
Genome-wide nucleosome position data for 12 yeast species
We mapped nucleosome positions genome-wide in 12 Ascomycetes Overall design: Illumina sequencing of mononucleosomal DNA isolated from mid-log cultures grown in rich medium... -
DNA damage-induced transcriptome changes in budding yeasts Saccharomyces cere...
This study compared the transcriptional response to DNA damage in two closely related yeasts, S. cerevisiae and C. glabrata. Overall design: We cultured S. cerevisiae and C.... -
Nucleosome positioning for 4 yeast species
We describe the genome-wide nucleosome profiles of four related yeast species. All species display the same global organization features first described in S. cerevisiae: a... -
FungID
Fungal identification -
Nakaseomyces glabratus Transcriptome or Gene expression
Identify the function of Mediator complex subunit Med15Bp in regulating pH homeostasis -
SFP1 (RNA-seq)
We measured global expression profiles in SFP1 deletion mutants and isogenic wild type strains during lag and log phase growth. To match the physiology of each species as well... -
Clinical isolate
A Comparative Study of Extraction and Purification Methods Using Simulated Hemoculture Specimens -
The evolution, evolvability, and engineering of gene regulatory DNA [RNA-seq]
Here, we used RNA-seq to quantify expression conservation across many Ascomycete yeasts. Overall design: We used strand-specific RNA-seq (dUTP) to quantify mRNA expression in... -
Genome-wide characterization of functional redundancy between Msn2 and Msn4 i...
Genome-wide characterization of functional redundancy between Msn2 and Msn4 pulses in Saccharomyces cerevisiae and Msn2_cg and Msn4_cg pulses in Candida glabrata by RNA-seq -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Biological chromodynamics: a general method for measuring protein occupancy a...
Sequencing DNA fragments associated with proteins following in vivo cross-linking with formaldehyde (known as ChIP-seq) has been used extensively to describe the distribution of...
