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Alizarin Red perturbs skeletal patterning and biomineralization via Catalase ...
Alizarin Red (AZ) is an anthraquinone dye that is commonly used in histological studies and textiles. Exposure to AZ results in morphological perturbations in several species,... -
Sea urchin comparative developmental ATAC-seq
Comparative genomics project analyzing evolution of cis-regulatory element function during sea urchin development -
Genome sequencing for Lytechinus variegatus
This dataset has no description
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Lytechinus variegatus Transcriptome or Gene expression
Transcriptome data, time course of embryonic development -
Phylogenetic analysis of Echinoderms
Echinoderms are the second largest phylum of deuterostomes after chordates and serve as important model systems for developmental biology and regeneration. We assembled de novo... -
Ethanol-treated Lytechinus variegatus (sea urchin) embryos
The effects of ethanol on developmental gene expression in sea urchins is compared to controls at three time points during gastrulation. Overall design: Control and... -
Developmental single-cell transcriptomics in the Lytechinus variegatus sea ur...
Using scRNA-seq coupled with computational approaches, we studied transcriptional changes in cell states of sea urchin embryos during development to the larval stage. Eighteen... -
Green sea urchin embryonic transcriptome
Green sea urchin embryonic transcriptome -
Comparative analysis of genome-scale, base-resolution DNA methylation profile...
We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue... -
Structural and molecular distinctions of secondary and primary spines in the ...
Sea urchins (echinoids) are common model organisms for research in developmental biology and for their transition from a bilateral larva into their post-metamorphic adult with... -
Conservation and contrast in cell states of echinoderm ovaries
In contrast to women, echinoderms have the amazing ability to keep producing functional gametes throughout their lifespan, in some cases exceeding 200 years. The histology and... -
Single-cell comparative transcriptomics of control and MK-886-treated sea urc...
We report the single-cell transcriptional profiling of sea urchin primary mesenchyme cells isolated from embryos treated with DMSO or with 5-lox activating protein (FLAP)... -
Elements of divergence in germline determination in closely related sea urchi...
Evolutionary transitions enable the wide diversity in life histories of plants and animals. This is particularly germane in the development of the germline in which fitness is a... -
Lytechinus variegatus isolate:Jap-2015-2 Genome sequencing and assembly
Provide the genome data and assembly genome of Lytechinus variegatus -
Lytechinus variegatus Genome sequencing and assembly
Sea urchins are marine invertebrates of extreme diversity of life span. Red sea urchin S. franciscanus is among the longest living creatures of the Ocean. Its lifetime is... -
Seawater carbon chemistry and regenerative capacity of in adult sea urchins s...
Increasing atmospheric carbon dioxide (CO2) has resulted in a change in seawater chemistry and lowering of pH, referred to as ocean acidification. Understanding how different... -
Effects of hypercapnia on aspects of feeding, nutrition, and growth in the ed...
Land-based aquaculture facilities experience occasional hypercapnic conditions due to the accumulation of the metabolic waste product carbon dioxide. Pre-gonadal Lytechinus... -
Seawater carbonate chemistry and early development of the sea urchin Lytechin...
Land-based aquaculture facilities often utilize additional bicarbonate sources such as commercial sea salts that are designed to boost alkalinity in order to buffer seawater...
