16 datasets found

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

To clarify which of the lamprey larval muscles require function of Lbx-A during development, we disrupted LjLbx-A locus during embryogenesis, using CRISPR/Cas9-mediated gene...

we generated the first full length transcriptome of Arctic lamprey across five tissues (brain, kidney, heart, gill, liver) by using PacBio RSII and Illumina RNA-Seq in this...

Lethenteron japonicum mitochondrion Genome sequencing

The brain requires complex mechanisms of genome regulation to encode and store behavioural information. In mammals, DNA methylation deposited at non-CG dinucleotides...

Transcriptome analysis in two species of lamprey was conducted to resolve the issues of evolution and development in vertebrate

To sequence and characterize transcriptome from various tissues of Lethenteron japonicum.

Vertebrates consist of two main phylogenetic groups: jawed vertebrates, or gnathostomes, and cyclostomes, extant agnathans. Therefore, comparisons between gnathostomes and...

ParaHox genes in Japanese lamprey

To analyse expression pattern of Nav channel genes in Japanese lamprey

We identified lamprey homologs of CTCF, and performed ChIP-seq for the CTCF protein in the Arctic lamprey, Lethenteron camtschaticum. Using the same anti-CTCF antibody, ChIP-seq...

WGS of Lethenteron camtschaticum

Here, we established the model of fungal infection to the lamprey larvae and then used RNA sequencing to investigate the molecular profile of lamprey larvae and its immune...

The DNA Zoo is a consortium focused on facilitating conservation efforts through the rapid generation and release of high-quality genomics resources.

The identification and expression analysis of the interferon regulatory factors (IRFs)

WGS (shotgun) of different lamprey species to analyse evolution of cytidine deaminase genes.