29 datasets found

Both bacterial and viral diseases are a major threat to farmed fish, as well as wild fish. As the antiviral immune mechanisms in lumpfish (Cyclopterus lumpus L.) are poorly...

Here, we profiled the lumpfish head kidney transcriptome response to Renibacterium salmoninarum at early and chronic infection stages. This project contains RNA-seq data of 12...

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

This project collects the genomic and transcriptomic data generated for Cyclopterus lumpus, common name lumpfish, to facilitate genome assembly and annotation as part of the...

This bio project includes 12 samples (3 fish head kidneys infected with M. viscosa, 3 fish head kidneys as control group, and 3 fish gills infected with M. viscosa, 3 fish gills...

The Vertebrate Genomes Project aims to provide annotated reference genome sequences for all vertebrate species. This project contains transcriptome data from various sequencing...

To discover genes and mechanisms involved in the lumpfish antiviral response, fish (n=9 per group, i.e., for qPCR) were intraperitoneally injected with either the viral mimic...

miRNA characterization in organs and developmental stages

Fish-T1K_Phylogeny Project

Lumpfish (Cyclopterus lumpus) is a transatlantic marine fish displaying large population sizes and a high potential for dispersal and gene-flow. These features are expected to...

Raw reads from samples of danish species, sequenced with the purpose of assembling mito genomes for future references.

This experiment aims at mapping the early response of lumpfish leukocytes against Vibrio anguillarum exposure. Fifteen fish were sacrificed and their head kidney were excised....

De novo genome assembly Cyclopterus lumpus

Groups of healthy lumpfish were exposed to Aeromonas salmonicida infection. RNASeq was done from healthy and infected fish to identify differentially expressed transcripts in...

We leveraged the lumpfish transcriptome to locate putative antifreeze proteins

Lumpfish (Cyclopterus lumpus) are found in the North Atlantic and adjacent parts of the Arctic Ocean. This assembly has been produced as part of the G10K-VGP project. Sequencing...

The study area is situated 400 m north of a small rocky island (Helgoland, 54°11'N, 07°52'E) in the southern North Sea. Fish and crustacean abundances were sampled using SCUBA...

Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to...

Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to...

Due to changing temperature regimes in the North- and the Wadden Sea, a fish survey in the Sylt Rømø bight (SRB) was established in 2007 for at least ten years. The aim is to...