12 datasets found

Pdx and Cdx genes are part of the ParaHox gene cluster, hypothesized to pattern the gut and anus. The goal was to examine the downstream molecular effects of mutation to Pdx and...

We mapped DNA methylation in 580 animal species (535 vertebrates, 45 invertebrates), resulting in 2443 genome-scale, base-resolution DNA methylation profiles of primary tissue...

EXPression AloNg Development and Evolution (EXPANDE) project aims to identify gene expression profiles expanded during embryogenesis and evolution. In brief, taking advantages...

The evolutionary origin of the vertebrate head remains a focal point in chordate evolutionary developmental biology. Integral to this discussion are the neural crest, placodes,...

Transcriptome data for selected Cnidarians, Lancelet and Earthworm.

5'-RACE transcriptomic analysis of mRNA 5'-terminal sequences in representative deuterostome species in order to assess the phylogenetic distribution of spliced-leader (SL)...

The emergence of the vertebrate liver is a prime example of the evolution of complex organs, yet the driving factors behind it remain unknown. Here, we utilize in vivo and in...

We assembled the genomes of three amphioxuses using Pacbio long-read sequencing and Hi-C technology. The genomes were assembled to the chromosome level.

This study aims to reveal the temporal dynamics of Branchiostoma belcheri and Branchiostoma floridae populations during the Pleistocene using a whole-genome resequencing strategy.

RNA-seq data of Branchiostome floridae single-blastomeres separated from 2-cell stage embryos or animal and vegetal tiers from 8-cell stage embryos

B. floridae transcriptome sequencing for pooled 20h larvae

A new assembly of the florida amphioxus was generated by reassembly of original sanger data, improved haplotype reconciliation, and application of long-range HiC-based...