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DNA Zoo
The DNA Zoo is a consortium focused on facilitating conservation efforts through the rapid generation and release of high-quality genomics resources. -
Alligator mississippiensis embryonic gene expression
The American alligator, like all other crocodilians and many other reptiles, undergoes temperature-dependent sex determination, in which the incubation temperature of an egg... -
Alligator mississippiensis Raw sequence reads
Small RNA reads generated from the testes of A. mississippiensis. -
Genome-wide DNA methylation patterns harbor signatures of hatchling sex and p...
Conservation of thermally sensitive species depends on monitoring organismal and population-level responses to environmental change in real time. Epigenetic processes are... -
American alligator tooth dental lamina RNA-seq
Comparison of RNA profiles at different stages of tooth regeneration Overall design: Alligator tooth dental laminae were collected at different stages of tooth cycle. RNA-seq... -
Extracting phototransduction cascade genes from birds
We developed a probe set that captures exonic regions of 46 genes representing the phototransduction cascade and other light responses. We successfully capture an average of 64... -
Genome-wide DNA methylation patterns harbor signatures of hatchling sex and p...
Conservation of thermally sensitive species depends on monitoring organismal and population-level responses to environmental change in real time. Epigenetic processes are... -
Evidence against tetrapod-wide digit identities and for a limited frame shift...
In crown group tetrapods, individual digits are homologized in relation to a pentadactyl ground plan. However, testing hypotheses of digit homology is challenging because it is... -
Alligator mississippiensis Transcriptome or Gene expression
RNA-seq on different compartments of the developing American alligator heart -
Alligator gastrointestinal tract Targeted Locus (Loci)
This study was done to evaluate the microbial communities from the American alligator during feeding and fasting in wild and farm-raised individuals (2009-2011), to evaluate... -
Alligator mississippiensis isolate:KSC_2009_1 Genome sequencing and assembly
Long-range and highly accurate de novo assembly from short-read data is one of the most pressing challenges in genomics. Recently, it has been shown that read pairs generated by... -
Alligator mississippiensis (American alligator) genome, rAllMis1, sequence data
The American alligator (Alligator mississippiensis) is a large crocodilian reptile native to the Southeastern United States. It is one of the two extant species in the genus... -
Alligator embryonic scale samples
Gene expression in alligator scales Overall design: RNA-seq was performed to study the gene expression profiling in developing alligator overlapping scales -
Liver transcriptomes from reptiles
Liver transcriptomes from reptiles: Thamnophis elegans Thamnophis couchi Alligator mississippiensis Anolis sagrei Elgaria multicarinata Sceloporus undulatus Pogona vitticeps... -
Alligator mississippiensis Genome sequencing and assembly
The American alligator is one of three crocodilian genomes currently being assembled by the International Crocodilian Genomes Working Group. The American alligator's genome,... -
RNA Sequencing of juvenile American alligator ovarian tissue
RNA sequencing was conducted for juvenile alligator ovarian tissue collected from two sites in Florida in order to assess transcriptomic divergence associated with developmental... -
Subdivision of ancestral scale genetic program underlies origin of feathers a...
Birds and other reptiles possess a diversity of feather and scale-like skin appendages. Feathers are commonly assumed to have originated from ancestral scales in theropod...
