112 datasets found

Advance the implementation of mNGS in pathogen diagnosis in clinics.

Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially...

The Genome sequencing and assembly of Klebsiella spp.

Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and...

To study the cause of the carbapenemase-producing hypervirulent klebsiella pneumoniae

This BioProject hosts genome sequence data for the FDA GenomeTrakr's validation strain set, which includes 32 bacterial species of foodborne pathogens and common contaminants....

Wastewater has a predominant role for Public Health as source, reservoir and vehicle of antimicrobial resistance genes. This role is especially critical in developing countries...

42 blood samples and 22 peri-pancreatic specimens from 42 suspected infected pancreatic necrosis patients were collected to investigate the diagnostic performance of metagenomic...

The effect of hemodynamic shear stress on endothelial gene expression was investigated in the porcine iliac arteries. Computational fluid dynamics simulations identified three...

Rapid detection of pathogens and antimicrobial resistance genes in ventilator-associated pneumonia in ICU by metagenomic nanopores sequencing

Whole-genome sequencing of bacterial isolates as part of WPHL's surveillance effort

Isolation of pathogens directly from primary liquid blood culture infection diagnosis using WGS