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Monthly time-series analysis of the marine microbial community from surface t...
This study primarily evaluates the monthly dynamics of the marine microbial community at the San Pedro Ocean Time-series station (SPOT near Los Angeles, CA, USA). Other marine... -
Direct meta-analyses reveal unexpected microbial life in the highly radioacti...
The pools of nuclear reactors facilities constitute harsh environments for life, bathed with ionizing radiations, filled with demineralized water and containing toxic... -
Evaluating the diversity and activity of marine archaea via 16S rRNA gene and...
This study evaluates the diversity and activity of marine archaea via 16S rRNA gene and transcript sequencing. This method is complementary to evaluation of the activity of... -
Metagenomics genotype and phenotype association analysis on DNA modification
This study applies the Metagenomics Genotype and Phenotype Association studies (MetaGPA) to identify novel DNA modification form or DNA modifying enzyme from environmental phage... -
Comparison of next-generation sequencing methods for catfish bacterial microb...
Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial... -
The detection of eDNA from all 19 species and subspecies of the genus Anguilla
The goal in my study is to develop a set of universal genus-spesific PCR primers for eDNA metabarcoding in order to correctly distinguish the eDNA of all the 19 species and... -
Protist biodiversity (18S V9) across Indo-Pacific
Water and sediment samples collected from coastal marine ecosystems across Indonesia to assess the biodiversity and structure of protist communities in the Indo-Pacific. -
Human gut metagenome, marine sediment metagenome, and synthetic metagenome
Read cloud sequencing and assembly of the human gut microbiome One marine sediment metagenome and one synthetic metagenome were included as validation and proof-of-concept of a... -
Endotracheal aspirate Raw sequence reads
Rapid detection of pathogens and antimicrobial resistance genes in ventilator-associated pneumonia in ICU by metagenomic nanopores sequencing -
Mobility based deep sequencing of 4 RNA targets
Mobility based deep sequencing of 4 RNA targets, which includes 2 riboswitches, 1 ribozyme and 1 xrRNA -
Design and Evaluation of Illumina MiSeq compatible 18S rRNA Primers for Impro...
A systematic analysis of the most commonly amplified 18S rRNA hypervariable regions and the effect that PCR/sequencing bias has on community representation. The V4 and V8-V9...