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NSPHL HAI WGS raw reads
Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab -
Linked machine learning models improve species classification of fungi when u...
The increased usage of long read sequencing has not been matched with publicly available databases suited for error-prone long reads when applied to metabarcodes. We address... -
CRISPR-Cas9 editing induces Loss of Heterozygosity in the pathogenic yeast Ca...
Genetic manipulation is often used to study gene function. However, unplanned genome changes (including Single Nucleotide Polymorphisms (SNPs), aneuploidy and Loss of... -
Whole genome sequencing of tunicamycin adaptors in Candida parapsilosis
We exposed Candida parapsilosis clinical isolate #12108 to YPD plate supplemented with 8µg/ml of tunicamycin. We randomly selected 18 adaptors. We did sequencing of these adaptors. -
Whole genome sequencing to study of pathogenic Candida strains
Aim of this project is to identify biomarkers associated with persistance of Candida strains in the host and with virulence/pathogenicity of the different strains -
Candida parapsilosis Genome sequencing and assembly
Genome sequencing of clinical strains of pathogenic yeast Candida parapsilosis was conducted in order to study the genomic variability of candida parapsilosis isolated from... -
Sequencing of azole-resistant isolate of Candida parapsilosis
The genome sequences of Candida parapsilosis BC014RPSC and BC014 strains were sequenced using Illumina, to identify Single Nucleotide Polymorphisms. -
Role of Hac1 in unfolded protein response in Candida parapsilosis
Investigation of the role of HAC1 using transcriptional profiling of Candida parapsilosis treated with 5 mM dithiothreitol Gene expression of wild type and hac1 deletion strains... -
Whole genome sequencing of 13 isolates of Candida albicans and 15 of Candida ...
We retrospectively studied consecutive patients admitted to the Neonatal care unit with candidaemia caused by C. albicans or C. parapsilosis. -
Candida parapsilosis Raw sequence reads
Sequences of 5 isolates of Candida parapsilosis taken from 3 body sites of a single individual. 2 different phenotypes were observed (smooth vs crepe shaped colonies on plates)... -
RNA-seq of Candida parapsilosis CLIB 214 (CBS 604) grown on different hydroxy...
Candida parapsilosis CLIB 214 (CBS 604) was grown on synthetic media containing hydroxyaromatic compounds as a sole carbon source. The cells cultivated in medium containing... -
Diagnosing corneal infections in formalin fixed specimens using next generati...
DNA extracted from 16 cases of infectious keratitis, as well as 4 control corneas with no known infection, was sequenced to detect pathogenic and non-pathogenic organisms. All... -
Loss of sterol demethylase activity reduces both azole and echinocandin antif...
The present study describes a novel mechanism of antifungal resistance affecting the susceptibility of both the azole and echinocandin antifungals in an azole-resistant isolate... -
Transcription Profiles Associated with Inducible Adhesion in Candida parapsil...
Candida parapsilosis has emerged as a frequent cause of invasive candidiasis with increasing evidence of unique biological features relative to C. albicans. As it adapts to... -
Comparative transcriptomic analysis of the response of CUG-clade Candida spec...
Pathogenic Candida fungi are a leading cause of opportunistic, hospital-associated bloodstream infections with high mortality rates, typically in immunocompromised patients.... -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Candida parapsilosis strain SR23 (CBS 7157) RNA-seq
We sequenced transcriptome of Candida parapsilosis strain SR23 (CBS 7157) by Illumina. -
RNA-seq of Candida parapsilosis
Systematic gene disruption in the fungal pathogen Candida parapsilosis elucidates roles of Met4 and Met28 in regulation of sulfur metabolism -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Genome sequencing of Candida parapsilosis NCYC 4289
Genome sequencing of Candida parapsilosis NCYC 4289, a faecal-derived isolate from a young male infant born prematurely in the UK, performed using a combination of short reads...