-
NSPHL HAI WGS raw reads
Fastq files for HAI bacteria sequenced at the Nevada State Public Health Lab -
Metagenomic survey and whole genome sequencing of antimicrobial resistant bac...
This project is related to metagenomic survey and genomic epidemiology analysis of antimicrobial resistance bacteria (in particular, carbapenem and/or beta-lactam resistant... -
soil bacterial isolates
The different 122 bacteria isolated from soil aggregates under three fertilizer treatments -
Genomic epidemiology and patterns of antimicrobial resistance of neonatal sep...
The level of antibiotic resistance in neonatal infections and its impact on mortality in low-middle income countries (LMICs) is unacceptably high. The study, entitled the Burden... -
Bacteria Genome sequencing and assembly
The genetic disorder cystic fibrosis is a life-limiting condition affecting ~70,000 people worldwide. Targeted, early, treatment of the dominant infecting species, Pseudomonas... -
NGS in HSCT
The fever of patients after allogeneic hematopoietic stem cell transplantation (allo-HSCT) is complex, and it is still challenging to identify the cause of the fever. The immune... -
CVM NARMS Retail Seafood Isolates
Whole genome sequencing of foodborne pathogens isolated from retail seafood as part of the US Food and Drug Administration surveillance project for NARMS -
Pakistan and United States ICU transmission dynamics
Use selective bacterial culture to understand the identity, prevalence, persistence, and transmission of bacteria contaminating hospital intensive care unit surfaces in two... -
DNA extraction and Whole Genome Sequencing of mycobacteria from early positiv...
Public description: Technological advances over the past 20 years have led to the widespread use of molecular assays that aid the diagnosis of tuberculosis. The number of... -
Hospital Microbiome Isolates
Antibiotic resistanct organisms isolated from hospital surfaces or patient stool or blood culture isolates -
Clinical evaluation of mNGS in unbiased pathogens diagnosis of UTIs
Advance the implementation of mNGS in pathogen diagnosis in clinics. -
Bacteria and yeast pathogens sequenced from human blood culture specimens
Bloodstream infection is a major cause of morbidity and mortality worldwide. Early pathogen detection and administration of appropriate antimicrobial therapy substantially... -
Enhanced detection system for hospital associated transmission (EDS-HAT)
Whole genome sequencing of bacterial pathogens is combined with machine learning and data mining of the electronic medical record to enhance outbreak detection in hospitals and... -
NIHR_Global_Health_Research_Unit_on_Genomic_Surveillance_of_Antimicrobial_Res...
This project is funded by the UK National Institute for Health Research to set up a full-fledged Global Health Research Unit (GHRU) through a grant awarded to the cGPS (Centre... -
FDA medical products genome sequencing and assembly of multi-species isolates
Whole genome sequencing of pure cultured microbial isolates of multiple species as part of the Food and Drug Administration surveillance effort of pathogens in medical products. -
Evaluation of De novo assembly of bacterial genomes with rapid MinION sequenc...
Complete genome sequences of organisms are the foundation of understanding biological functions. High-throughput parallel sequencing technologies such as Illumina make the... -
Genome Encyclopedia of Spacecraft Associated Microbes
Whole genome sequencing of spacecraft associated microorganisms from cleanroom environments. Isolates originated from various Mars bound missions beginning with the Viking... -
Clinical metagenomics and metatranscriptomics for pathogen discovery
This project aims to develop DNA and RNA sequencing as tools for pathogen discovery in a clinical setting. -
Assorted bacteria with public health implications
Bacteria with public health implications due to virulence or antimicrobial resistance. Many of these bacteria were associated with outbreaks or have abnormal characteristics....