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Saccharomyces cerevisiae Raw sequence reads
These data contribute to the understanding of genetic regulatory mechanisms in response to weak acids when fermenting mixed sugars (glucose and xylose). -
Yeast variant calling with bcbio next-gen pipeline
We resequenced 49 cones of the Saccharomyces cerevisiae strain BY4742 and compared SNP and small INDEL calling using 5 variant callers or using a consensus calling method,... -
Luc7 Mutant RNA Sequencing
RNA sequencing data collected from Saccharomyces cerevisiae lacking luc7 complimented with mutant luc7. -
Long-range single-molecule mapping of chromatin accessibility in eukaryotes
Active regulatory elements in eukaryotes are typically characterized by an open, nucleosome-depleted chromatin structure mapping areas of open chromatin has accordingly emerged... -
Transcriptome-wide analysis of roles for tRNA modifications in translational ...
Covalent nucleotide modifications in noncoding RNAs such as tRNAs affect a plethora of biological processes, with new functions continuing to be discovered for even well-known... -
Chromosome sequencing
nucleosome region sequenceing of Saccharomyces Cerevisiae -
Post-transcriptional mechanisms modulate the consequences of adaptive copy nu...
Copy-number variants (CNVs) are large-scale amplifications or deletions of DNA that can drive rapid adaptive evolution and result in large-scale changes in gene expression.... -
Gene expression analysis of multiple Saccharomyces cerevisiae strains
Gene expression analysis of multiple Saccharomyces cerevisiae strains -
A selection of Saccharomyces cerevisiae promoters for biotechnological applic...
Glycerol offers several advantages as a substrate for biotechnological applications. An important step towards using the popular production host Saccharomyces cerevisiae for... -
Saccharomyces cerevisiae synthetic chromosome IV
This project is a part of Synthetic Yeast Genome Project (Sc2.0). Here we design, assemble, and characterized Sc2.0 chromosome IV, SynIV -
Glucose Starvation Induces a Switch in the Histone Acetylome for Activation o...
Acetyl-CoA is a key intermediate in metabolism situated at the intersection of many metabolic pathways. The reliance of histone acetylation on acetyl-CoA enables gene expression... -
Gene expression profiling in allele replacement panel strains containing all ...
We study the effect of four QTN in RME1, IME1 & RSF1 that are causative for variation in sporulation efficiency. We investigate the relationship between genotype, gene... -
Genome-wide maps of H3 and H4 acetylation in wild type and gds1 deletion stra...
The goals of this study are to compare Next-Generation-Sequecing (NGS)-derived genome-wide occupancy of H3 and H4 acetylation in S. cerevisiae wildtype and gds1 deletion strain.... -
Minimal requirements for the epigenetic inheritance of engineered silent chro...
Mechanisms enabling genetically identical cells to differentially regulate gene expression are complex and central to organismal development and evolution. While gene silencing... -
Ribosome Footprinting of WT and mutant yeast cells at different temperatures
We use ribosome footprinting to assess the gene expression changes occuring after 10 minutes of heat stress at either 40°C or 42°C compared to non-stressed yeast cells (30°C).... -
DNA damage-induced transcriptome changes in budding yeasts Saccharomyces cere...
This study compared the transcriptional response to DNA damage in two closely related yeasts, S. cerevisiae and C. glabrata. Overall design: We cultured S. cerevisiae and C.... -
NET-seq of S. cerevisiae cells after knocking-out genes encoding various mRNA...
NET-seq was performed on yeast strains carrying deletions of mRNA decay factors (plus a control) in order to assess the effect of their deletion on RNA polymerase II occupancy... -
Casein Kinase 2 Mediated Phosphorylation of Spt6 Modulates Histone dynamics a...
CK2 is an essential protein kinase implicated in various cellular processes. In this study, we address a potential role of this kinase in chromatin modulations associated with... -
RNAseq analysis of dormant cells
We report the application of ssequencing technology for high-throughput profiling of hypoxia cell in the yeast Cryptococcus neoformans. Our study represents the first detailed...