8,053 datasets found

Vibrio and related spp sequenced as part of a GRDI-AMR initiative.

A composition of prokaryotes in the semi-closed bay, Yeong-do, Busan, Korea

We compared different fixatives for long-term preservatuon of marine microbial communities in seawater, and how these impact subsequent amplicon sequencing.

We sequenced the genomes of six Mucoromycotina fungi representing distant saprotrophic lineages within the subphylum (i.e. Umbelopsidales and Mucorales). We selected two...

This project reveals archaeal diversity in deep-sea sediment

This study focuses on comparing the bacterial biomes of San Diego Bay seawater based on analyzing a partial 16SrRNA amplicon library from NGS data. In this library, DNA samples...

This study performed in situ incubation experiment with pyrite (FeS2), Zerovalent iron and basalt glass at the deep seafloor around hydrothermal vent in Izu-Bonin arc. And we...

CDC’s Division of Healthcare Quality Promotion’s BioProject for whole genome sequence data of Enterococcus spp. We have implemented a standard scheme for isolate/sample...

16S rDNA sequencing data from cultured plates and marine sediments

We tested modifications to our laboratory eDNA metabarcoding protocol to better understand determinants of species detection.

The objective of this study was to test feasibility of eDNA metabarcoding for the tropical and subtropical fishes in a coral reef region.

Marine microbial communities from expanding oxygen minimum zones in the northeastern subarctic Pacific Ocean

In this work, we collected turbot samples from farmed ponds with ED and healthy samples to understand changes in the ocular microbiota of turbot suffering from ED. We compared...

Here we present and validate two novel microvolume DNA extraction techniques that employ either i) physical or ii) chemical lysis to rupture cells, facilitating accurate...

the 16S rRNA sequencing of corals (Pocillopora damicornis, Galaxea fascicularis, Porites lutea)

Samples of Nibea albiflora (voucher no. 477) were collected from Zhoushan, China. Total genomic DNA was extracted from muscle tissue. Paired-end genomic library was constructed...

Aquaculture plays a major role in the coastal economy of the Mediterranean Sea. This raises the issue of the impact of fish cages on the surrounding environment. Here we explore...

V3 metagenomics of sediment and water samples collected from South West Indian Ridge

We tested the effect of freezing seawater samples on their downstream eDNA community composition using amplicon sequencing of two molecular markers (COI and 12S rRNA gene)

Challenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing...