-
demoa-base: a biophysics simulator for muscle-driven motion
For more information, such as installation, requirements and user guide, please see the demoa-manual.pdf The developement of this package was supported by “Deutsche... -
Postprocessing Code for 'Falling Heads': investigating reflexive responses to...
This dataset contains the code necessary to postprocess the experimental trajectory data of the Falling Heads experiment and perform the inverse dynamics analysis as described... -
Additional data related to Schnee et al.: Mechanistic basis of the increased ...
This data collection contains additional data related to Schnee et al.: Mechanistic basis of the increased methylation activity of the SETD2 protein lysine methyltransferase... -
Catalysis of L-cysteine by IscS in the presence of IscU
Measured was the reaction from cysteine to alanine by the Cysteine desulfurase, for six different initial concentrations of cysteine. The data consists of three data points over... -
Carboligation of Pyruvate catalysed by HcAHAS C Unit
The data was measured in the course of a Bachelor thesis and filled into the EnzymeML Spreadsheet. Measured was the absorption for the reaction from pyruvate to acetolactate.... -
Deactivation of Glucose Oxidase
The data is unpublished and contains absorption data over time, together with the calculated initial rates. Reaction conditions and the experimental setup are described in the... -
Synthesis and Hydrolysis of Cephalexin
Investigated was the synthesis and hydrolysis of cephalexin, and the hydrolysis of phenylglycine methyl ester by an amino ester hydrolase. The concentrations of all reactants... -
Oxidation of ABTS by Trametes versicolor laccase
Investigated was the oxidation of ABTS and syringaldazine by Trametes versicolor laccase. For this, the concentration of the substrate over time was measured, for different... -
Propioin Synthesis using Benzoin Aldolase
Investigated was the ligation of two molecules propanal in organic conditions, catalysed by the benzoin aldolase, which was added in the form of lyophillised whole cells. The... -
Python scripts related to MD simulations in "Preferential interaction of DNMT...
Python scripts used for the Molecular Dynamics Simulation presented in "Preferential interaction of DNMT3A subunits containing the R882H cancer mutation leads to dominant... -
Role of the gut microbiome in neuroendocrine tumors
a prospective cohort study of patients with neuroendocrine tumors, fecal samples The data are sensitive since they involve personal information of patients. There are... -
Viro-immunological, clinical and psychosocial correlates of disease severity ...
The RECoVERED Study is a prospective cohort study based in Amsterdam, the Netherlands. 342 Participants aged ≥18 years were enrolled between 11 May 2020 and 1 May 2021,... -
Data related to "Preferential interaction of DNMT3A subunits containing the R...
Methylation of substrate libraries Single-stranded DNA oligonucleotides used for generation of double stranded substrates with a distance of 12 base pairs between CpG sites were... -
A head-to-head comparison of the adult EQ-5D-5L and youth EQ-5D-Y-5L in adole...
This dataset includes patient and clinical characteristics, and questionnaire responses of n=107 patients whom participated in the study: "A head-to-head comparison of the adult... -
EPO-overexpressing kidney organoids engineered using an episomal DNA vector e...
The dataset contains all the raw data (RT-PCR, enzyme activity measurement, immunohistochemical staining quantification, Western blots) of the data presented in the manuscript... -
Supporting Information for Rapid Particle-based Simulations of Cellular Signa...
This folder contains expected inputs and outputs from the example model used in the paper "Rapid Particle-based Simulations of Cellular Signalling with the FLAME-accelerated... -
Data for: Correlation of mitochondrial TOM core complex stop-and-go and open-...
The role of lateral diffusion of proteins in the membrane in the context of function has not been examined extensively. The data set addresses the relationship between protein... -
Deep enzymology data related to Adam et al.: Flanking sequences influence the...
Experimental procedures for deep enzymology reactions with randomized substrates: For analysis of flanking sequence preferences of the TET enzymes, a similar approach as... -
EnzymeML Metadata Block Configuration for Dataverse
This dataset contains a TSV-File for the configuration of a metadata block for data repositories basing on Dataverse. The block helps to describe datasets with the concepts of... -
Profile hidden Markov model for PETase homologues
Sixteen protein sequences for enzymes with known activity against polyethylene terephthalate (PET) were clustered using CD-HIT to derive a reduced set of twelve centroid...